Variant report

Variant	rs1149647
Chromosome Location	chr1:56656066-56656067
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1149639	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149649	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1230037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1235423	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1236961	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341341	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1412217	0.87[AMR][1000 genomes]
rs1557060	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1557061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1724988	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1935050	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096085	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2211292	0.82[EUR][1000 genomes]
rs2404524	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4927309	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs697583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706375	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs706376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706383	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538742	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778120	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778122	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778127	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778382	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778397	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778410	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs778423	0.87[AFR][1000 genomes]
rs778425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778426	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs947008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56653800-56656200	Enhancers	Fetal Stomach	stomach
5	chr1:56653800-56657000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:56653800-56657000	Enhancers	Adipose Nuclei	Adipose
7	chr1:56653800-56657000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
9	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
10	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
11	chr1:56653800-56669400	Enhancers	Placenta	Placenta
12	chr1:56654000-56656200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:56654000-56657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr1:56654200-56656200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:56654200-56656200	Enhancers	Brain Substantia Nigra	brain
17	chr1:56654200-56657000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:56654400-56656200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:56654400-56657400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:56654400-56657600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr1:56654600-56656200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr1:56654600-56656200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr1:56654600-56656600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr1:56654600-56657000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:56654800-56656200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr1:56654800-56656800	Enhancers	A549	lung
27	chr1:56655000-56656800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr1:56655000-56657600	Flanking Active TSS	HepG2	liver
29	chr1:56655000-56658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
31	chr1:56655400-56656200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr1:56655400-56656600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:56655600-56656800	Enhancers	HSMMtube	muscle
34	chr1:56655600-56657400	Weak transcription	Ovary	ovary
35	chr1:56655800-56656200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr1:56655800-56656200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
37	chr1:56655800-56656200	Enhancers	Left Ventricle	heart
38	chr1:56655800-56656200	Enhancers	Right Atrium	heart
39	chr1:56655800-56656400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:56655800-56658200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:56656000-56656200	Active TSS	Brain Hippocampus Middle	brain
42	chr1:56656000-56657800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:56656000-56658000	Enhancers	Osteobl	bone
44	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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