Variant report

Variant	rs1724988
Chromosome Location	chr1:56616981-56616982
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10888955	0.81[AMR][1000 genomes]
rs11206731	0.85[ASN][1000 genomes]
rs11206735	0.86[ASN][1000 genomes]
rs1149639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149647	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12025982	0.86[ASN][1000 genomes]
rs12041298	0.83[ASN][1000 genomes]
rs12043247	0.84[ASN][1000 genomes]
rs1230037	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1235423	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1236961	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1331855	0.86[ASN][1000 genomes]
rs1341341	0.82[AMR][1000 genomes]
rs1412217	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557060	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1557061	0.83[AMR][1000 genomes]
rs1935050	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs2000147	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2096085	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2404524	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4927309	0.82[AMR][1000 genomes]
rs6670027	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6675451	0.86[ASN][1000 genomes]
rs697583	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706375	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706376	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs706383	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706395	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7538742	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7551693	0.85[ASN][1000 genomes]
rs778120	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778122	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778127	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778382	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778397	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778410	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778425	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778426	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778428	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778430	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778431	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs947008	0.89[CEU][hapmap];0.82[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
4	chr1:56615000-56617400	Enhancers	NHDF-Ad	bronchial
5	chr1:56615200-56618600	Weak transcription	HUVEC	blood vessel
6	chr1:56615400-56617600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56616000-56617400	Enhancers	Adipose Nuclei	Adipose
8	chr1:56616000-56617600	Enhancers	Psoas Muscle	Psoas
9	chr1:56616000-56618800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:56616400-56617000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:56616400-56617400	Enhancers	Fetal Stomach	stomach
12	chr1:56616600-56618000	Enhancers	Fetal Intestine Large	intestine
13	chr1:56616800-56617200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:56616800-56617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:56616800-56617400	Enhancers	Fetal Intestine Small	intestine
16	chr1:56616800-56617400	Enhancers	Fetal Lung	lung
17	chr1:56616800-56617400	Enhancers	NHLF	lung
18	chr1:56616800-56617600	Enhancers	Liver	Liver

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