Variant report

Variant	rs7551693
Chromosome Location	chr1:56536026-56536027
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10158150	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10888955	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206731	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206735	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149639	0.86[ASN][1000 genomes]
rs1156337	0.83[EUR][1000 genomes]
rs1156338	0.83[EUR][1000 genomes]
rs12025982	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12041298	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12043247	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12131359	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1235423	0.85[ASN][1000 genomes]
rs1331855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1331856	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1412215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1412217	0.91[ASN][1000 genomes]
rs1547157	0.84[EUR][1000 genomes]
rs1724988	0.85[ASN][1000 genomes]
rs1998715	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2192106	0.83[EUR][1000 genomes]
rs2211047	0.83[EUR][1000 genomes]
rs2404391	0.84[EUR][1000 genomes]
rs2404393	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4926707	0.86[EUR][1000 genomes]
rs4926708	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56845669	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61772104	0.84[EUR][1000 genomes]
rs6670027	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6673458	0.88[EUR][1000 genomes]
rs6675451	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6675960	0.81[EUR][1000 genomes]
rs7525207	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7534031	0.84[EUR][1000 genomes]
rs778122	0.85[ASN][1000 genomes]
rs778127	0.90[ASN][1000 genomes]
rs9436997	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs973501	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7551693	POU3F1	trans	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56529200-56540400	Enhancers	NHDF-Ad	bronchial
3	chr1:56532800-56538200	Weak transcription	Placenta	Placenta
4	chr1:56533000-56540600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56533600-56536800	Enhancers	Osteobl	bone
6	chr1:56533800-56536200	Enhancers	HUVEC	blood vessel
7	chr1:56533800-56536800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56533800-56536800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:56533800-56537400	Enhancers	NHLF	lung
10	chr1:56534000-56536800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:56534000-56536800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:56534200-56537800	Weak transcription	Ovary	ovary
13	chr1:56535000-56536800	Enhancers	Fetal Muscle Leg	muscle
14	chr1:56535200-56537800	Weak transcription	Aorta	Aorta
15	chr1:56535200-56538200	Weak transcription	Hela-S3	cervix
16	chr1:56535200-56538600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:56535200-56538600	Weak transcription	Left Ventricle	heart
18	chr1:56535200-56538600	Weak transcription	Psoas Muscle	Psoas
19	chr1:56535200-56539000	Weak transcription	HSMMtube	muscle
20	chr1:56535200-56539400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:56535600-56539800	Weak transcription	HSMM	muscle
22	chr1:56535800-56539000	Weak transcription	Fetal Stomach	stomach
23	chr1:56536000-56536600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links