Variant report

Variant	rs9436997
Chromosome Location	chr1:56525653-56525654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10158150	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10888955	0.83[EUR][1000 genomes]
rs11206731	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11206735	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1156337	0.81[EUR][1000 genomes]
rs1156338	0.80[EUR][1000 genomes]
rs12025982	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12041298	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12043247	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12131359	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331855	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1331856	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1412215	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1547157	0.81[EUR][1000 genomes]
rs1998715	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2211047	0.81[EUR][1000 genomes]
rs2404391	0.81[EUR][1000 genomes]
rs2404393	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4926707	0.83[EUR][1000 genomes]
rs4926708	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56845669	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61772104	0.81[EUR][1000 genomes]
rs6670027	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6673458	0.85[EUR][1000 genomes]
rs6675451	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7525207	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534031	0.81[EUR][1000 genomes]
rs7551693	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs973501	0.81[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56521400-56534600	Weak transcription	Psoas Muscle	Psoas
3	chr1:56522800-56525800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56522800-56526400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:56522800-56526400	Weak transcription	NHLF	lung
6	chr1:56522800-56529200	Weak transcription	HSMMtube	muscle
7	chr1:56522800-56529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:56522800-56529800	Weak transcription	Osteobl	bone
9	chr1:56523000-56526400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:56523000-56529200	Weak transcription	HSMM	muscle
11	chr1:56523800-56526400	Weak transcription	Fetal Brain Male	brain
12	chr1:56524000-56526400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:56524000-56526400	Weak transcription	NHDF-Ad	bronchial
14	chr1:56524200-56525800	Weak transcription	Fetal Lung	lung
15	chr1:56524200-56528200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:56524400-56525800	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:56524400-56526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:56524400-56526400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:56524400-56526400	Weak transcription	Lung	lung
20	chr1:56524400-56527400	Weak transcription	Fetal Stomach	stomach
21	chr1:56524400-56528200	Weak transcription	Right Atrium	heart
22	chr1:56525600-56525800	Enhancers	Ovary	ovary
23	chr1:56525600-56526200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr1:56525600-56526800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:56525600-56526800	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:56525600-56527800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:56525600-56530400	Enhancers	Placenta	Placenta

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