Variant report

Variant	rs2404393
Chromosome Location	chr1:56505301-56505302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10158150	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1041110	0.82[EUR][1000 genomes]
rs11206712	0.81[EUR][1000 genomes]
rs11206713	0.82[EUR][1000 genomes]
rs11206731	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206735	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1156337	0.88[EUR][1000 genomes]
rs1156338	0.87[EUR][1000 genomes]
rs12025982	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12041298	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12043247	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12131359	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1331855	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1331856	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1412215	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1416130	0.82[EUR][1000 genomes]
rs1547157	0.89[EUR][1000 genomes]
rs1933625	0.82[EUR][1000 genomes]
rs1998715	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192106	0.88[EUR][1000 genomes]
rs2211047	0.88[EUR][1000 genomes]
rs2404391	0.89[EUR][1000 genomes]
rs4926707	0.91[EUR][1000 genomes]
rs4926708	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4927290	0.82[EUR][1000 genomes]
rs56845669	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61772104	0.89[EUR][1000 genomes]
rs6588596	0.81[EUR][1000 genomes]
rs6588597	0.82[EUR][1000 genomes]
rs6588600	0.82[EUR][1000 genomes]
rs6670027	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6673458	0.82[EUR][1000 genomes]
rs6675451	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6675960	0.87[EUR][1000 genomes]
rs6677449	0.81[EUR][1000 genomes]
rs7525207	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7534031	0.89[EUR][1000 genomes]
rs7551693	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9436997	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs973501	0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2404393	POU3F1	trans	parietal	SCAN
rs2404393	YIPF1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56492400-56506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56499600-56522200	Weak transcription	Placenta	Placenta
3	chr1:56501000-56506200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56501200-56506400	Weak transcription	Adipose Nuclei	Adipose

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