Variant report

Variant	rs1331855
Chromosome Location	chr1:56531889-56531890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56531749..56534195-chr1:56537938..56539674,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10158150	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10888955	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206731	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206735	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149639	0.87[ASN][1000 genomes]
rs1156337	0.82[EUR][1000 genomes]
rs1156338	0.82[EUR][1000 genomes]
rs12025982	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041298	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12043247	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12131359	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1235423	0.86[ASN][1000 genomes]
rs1331856	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412215	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412217	0.92[ASN][1000 genomes]
rs1547157	0.83[EUR][1000 genomes]
rs1724988	0.86[ASN][1000 genomes]
rs1998715	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192106	0.82[EUR][1000 genomes]
rs2211047	0.82[EUR][1000 genomes]
rs2404391	0.83[EUR][1000 genomes]
rs2404393	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4926707	0.85[EUR][1000 genomes]
rs4926708	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56845669	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61772104	0.83[EUR][1000 genomes]
rs6670027	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673458	0.87[EUR][1000 genomes]
rs6675451	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675960	0.80[EUR][1000 genomes]
rs7525207	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534031	0.83[EUR][1000 genomes]
rs7551693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778122	0.86[ASN][1000 genomes]
rs778127	0.92[ASN][1000 genomes]
rs9436997	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs973501	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1331855	POU3F1	trans	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56518200-56540000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56521400-56534600	Weak transcription	Psoas Muscle	Psoas
3	chr1:56526200-56532000	Weak transcription	Aorta	Aorta
4	chr1:56526800-56533800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:56529000-56532000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56529200-56532200	Enhancers	NHLF	lung
7	chr1:56529200-56532400	Enhancers	HSMM	muscle
8	chr1:56529200-56532400	Enhancers	HSMMtube	muscle
9	chr1:56529200-56540400	Enhancers	NHDF-Ad	bronchial
10	chr1:56529400-56532000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:56529600-56532200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:56529800-56532000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:56529800-56532000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:56529800-56532000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:56529800-56532400	Enhancers	Osteobl	bone
16	chr1:56530200-56534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:56530200-56535000	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:56530800-56532800	Enhancers	Placenta	Placenta
19	chr1:56530800-56533800	Weak transcription	Hela-S3	cervix
20	chr1:56531000-56532200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:56531400-56532400	Enhancers	A549	lung
22	chr1:56531800-56532400	Enhancers	Ovary	ovary
23	chr1:56531800-56532600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:56531800-56534000	Weak transcription	HMEC	breast
25	chr1:56531800-56534000	Weak transcription	NHEK	skin
26	chr1:56531800-56534200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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