Variant report

Variant	rs12041298
Chromosome Location	chr1:56544074-56544075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10158150	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10888955	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206731	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11206735	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1149639	0.84[ASN][1000 genomes]
rs1156337	0.82[EUR][1000 genomes]
rs1156338	0.82[EUR][1000 genomes]
rs12025982	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12043247	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12131359	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1235423	0.83[ASN][1000 genomes]
rs1331855	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1331856	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412215	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412217	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1547157	0.83[EUR][1000 genomes]
rs1724988	0.83[ASN][1000 genomes]
rs1998715	0.83[EUR][1000 genomes]
rs2192106	0.82[EUR][1000 genomes]
rs2211047	0.83[EUR][1000 genomes]
rs2404391	0.83[EUR][1000 genomes]
rs2404393	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4926707	0.85[EUR][1000 genomes]
rs4926708	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56845669	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61772104	0.83[EUR][1000 genomes]
rs6670027	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6673458	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6675451	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6675960	0.80[EUR][1000 genomes]
rs7525207	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7534031	0.83[EUR][1000 genomes]
rs7551693	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778122	0.83[ASN][1000 genomes]
rs778127	0.89[ASN][1000 genomes]
rs9436997	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs973501	0.83[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56540200-56544800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:56540200-56549600	Weak transcription	Left Ventricle	heart
3	chr1:56540400-56545000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:56540400-56545000	Weak transcription	Hela-S3	cervix
5	chr1:56540400-56545000	Weak transcription	HUVEC	blood vessel
6	chr1:56540400-56545600	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:56540400-56545800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:56540400-56546000	Weak transcription	NHLF	lung
9	chr1:56540400-56546200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:56540400-56546800	Weak transcription	Ovary	ovary
11	chr1:56540400-56547000	Weak transcription	Right Atrium	heart
12	chr1:56540600-56546200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:56543000-56550000	Weak transcription	Psoas Muscle	Psoas
14	chr1:56543200-56545600	Weak transcription	Fetal Stomach	stomach
15	chr1:56543400-56545200	Weak transcription	NHDF-Ad	bronchial
16	chr1:56543400-56545800	Weak transcription	Fetal Lung	lung
17	chr1:56543600-56546000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:56543800-56545600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:56544000-56546000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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