Variant report

Variant	rs1235423
Chromosome Location	chr1:56612956-56612957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11206731	0.86[ASN][1000 genomes]
rs11206735	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1149639	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149641	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149647	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12025982	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12041298	0.83[ASN][1000 genomes]
rs12043247	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1230037	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1236961	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1331855	0.86[ASN][1000 genomes]
rs1412217	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1724988	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935050	0.89[CEU][hapmap]
rs2000147	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2096085	0.81[AMR][1000 genomes]
rs2404524	0.81[AMR][1000 genomes]
rs6670027	0.86[ASN][1000 genomes]
rs6675451	0.86[ASN][1000 genomes]
rs697583	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706375	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs706376	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs706383	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706395	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7551693	0.85[ASN][1000 genomes]
rs778120	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778127	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778397	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778410	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778425	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778426	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778428	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778430	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs947008	0.89[CEU][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
2	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56610800-56613600	Weak transcription	Fetal Intestine Small	intestine
4	chr1:56611000-56613600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56611400-56613000	Enhancers	Adipose Nuclei	Adipose
7	chr1:56611400-56613600	Enhancers	Fetal Kidney	kidney
8	chr1:56611400-56613600	Enhancers	NHDF-Ad	bronchial
9	chr1:56611400-56613800	Enhancers	Fetal Stomach	stomach
10	chr1:56611600-56613000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:56612000-56613200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:56612000-56613400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:56612600-56613600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:56612600-56615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56612600-56616000	Weak transcription	Psoas Muscle	Psoas
16	chr1:56612800-56613000	Enhancers	Fetal Intestine Large	intestine
17	chr1:56612800-56616400	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
19	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus

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