Variant report

Variant	rs706395
Chromosome Location	chr1:56648978-56648979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1149639	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149649	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1230037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1235423	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1236961	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1341341	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1412217	0.87[AMR][1000 genomes]
rs1557060	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1557061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1724988	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1935050	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096085	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2211292	0.81[EUR][1000 genomes]
rs2404524	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4927309	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs697583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706375	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs706376	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706383	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7538742	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778120	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778122	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778127	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs778382	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778397	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778410	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs778423	0.86[AFR][1000 genomes]
rs778425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778426	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs947008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56640200-56651200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:56645600-56654000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:56645800-56651200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:56645800-56651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:56646000-56651200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:56646800-56653800	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:56647000-56655800	Weak transcription	Aorta	Aorta
8	chr1:56647200-56651200	Weak transcription	Fetal Stomach	stomach
9	chr1:56647200-56655000	Weak transcription	Fetal Kidney	kidney
10	chr1:56647600-56651200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:56647600-56651200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:56647600-56653000	Weak transcription	Fetal Lung	lung
13	chr1:56647600-56653800	Weak transcription	NHDF-Ad	bronchial
14	chr1:56647800-56651200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:56647800-56651400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:56647800-56651400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:56647800-56651800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:56647800-56654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:56647800-56654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:56647800-56654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:56648800-56649800	Enhancers	HepG2	liver

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