Variant report

Variant	rs778382
Chromosome Location	chr1:56635806-56635807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1149639	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149641	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149647	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1149649	0.81[AMR][1000 genomes]
rs1230037	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1235423	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1236961	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1341341	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1412217	0.86[AMR][1000 genomes]
rs1557060	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1557061	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1724988	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1935050	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2000147	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2096085	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2211292	0.80[EUR][1000 genomes]
rs2404524	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4927309	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs697583	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706375	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs706376	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706383	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706395	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7538742	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778120	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778122	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778127	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778397	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs778410	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778425	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778426	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs778428	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778430	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778431	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs947008	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs778382	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56625600-56636200	Weak transcription	Aorta	Aorta
2	chr1:56633600-56636600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:56633800-56636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56635000-56636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:56635200-56636200	Weak transcription	Psoas Muscle	Psoas
6	chr1:56635200-56636400	Enhancers	NHLF	lung
7	chr1:56635200-56636600	Enhancers	Osteobl	bone
8	chr1:56635200-56637000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:56635200-56637000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56635200-56637000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:56635200-56637000	Enhancers	NHDF-Ad	bronchial
12	chr1:56635400-56636200	Weak transcription	Fetal Heart	heart
13	chr1:56635400-56636400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:56635400-56636800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:56635400-56637000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:56635600-56636400	Weak transcription	Fetal Kidney	kidney

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