Variant report

Variant	rs778430
Chromosome Location	chr1:56664219-56664220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1149639	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1149649	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1230037	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235423	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1236961	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341341	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1412217	0.87[AMR][1000 genomes]
rs1557060	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1557061	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1724988	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1935050	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2000147	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2096085	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2211292	0.82[EUR][1000 genomes]
rs2404524	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4927309	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs697583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706375	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs706376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706395	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7538742	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778120	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778122	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778127	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs778382	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778397	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778410	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778423	0.86[AFR][1000 genomes]
rs778425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778426	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947008	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:56657800-56665800	Weak transcription	Fetal Kidney	kidney
5	chr1:56658200-56665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:56661200-56665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:56661800-56666000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:56662200-56665600	Weak transcription	NHDF-Ad	bronchial
9	chr1:56662200-56668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56662800-56665400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:56662800-56666600	Enhancers	Psoas Muscle	Psoas
12	chr1:56662800-56667600	Enhancers	Fetal Muscle Leg	muscle
13	chr1:56663000-56664400	Enhancers	Right Atrium	heart
14	chr1:56663000-56665600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56663000-56667200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:56663200-56664400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:56663200-56664400	Weak transcription	Fetal Heart	heart
18	chr1:56663200-56665600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:56663200-56668000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr1:56663200-56670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:56663400-56666400	Enhancers	Left Ventricle	heart
22	chr1:56663800-56664400	Enhancers	Right Ventricle	heart
23	chr1:56664200-56665000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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