Variant report

Variant	rs2096085
Chromosome Location	chr1:56743630-56743631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1149639	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1149641	0.81[AMR][1000 genomes]
rs1149647	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1230037	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1235423	0.81[AMR][1000 genomes]
rs1236961	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1341341	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1557060	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557061	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1724988	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1935050	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000147	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2211292	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2404524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927309	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs697583	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs706375	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs706376	0.93[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706383	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs706395	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7538742	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778120	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778122	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs778127	0.81[AMR][1000 genomes]
rs778382	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778397	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778410	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778425	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778426	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778428	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778430	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778431	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs947008	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56743600-56743800	Enhancers	Fetal Stomach	stomach
2	chr1:56743600-56745200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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