Variant report

Variant	rs778127
Chromosome Location	chr1:56604087-56604088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10888955	0.84[AMR][1000 genomes]
rs11206731	0.91[ASN][1000 genomes]
rs11206735	0.92[ASN][1000 genomes]
rs1149639	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149641	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1149647	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12025982	0.92[ASN][1000 genomes]
rs12041298	0.89[ASN][1000 genomes]
rs12043247	0.90[ASN][1000 genomes]
rs1230037	0.86[AMR][1000 genomes]
rs1235423	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1236961	0.91[AMR][1000 genomes]
rs1331855	0.92[ASN][1000 genomes]
rs1341341	0.81[AMR][1000 genomes]
rs1412217	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1724988	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935050	0.81[AMR][1000 genomes]
rs2000147	0.84[AMR][1000 genomes]
rs2096085	0.81[AMR][1000 genomes]
rs2404524	0.81[AMR][1000 genomes]
rs4927309	0.81[AMR][1000 genomes]
rs6670027	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6675451	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs697583	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs706375	0.91[AMR][1000 genomes]
rs706376	0.92[AMR][1000 genomes]
rs706383	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs706395	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7551693	0.90[ASN][1000 genomes]
rs778120	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778122	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778382	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778397	0.88[AMR][1000 genomes]
rs778410	0.84[AMR][1000 genomes]
rs778425	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778426	0.91[AMR][1000 genomes]
rs778428	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs778430	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs778431	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs947008	0.81[AMR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56600600-56604400	Enhancers	Hela-S3	cervix
2	chr1:56600600-56604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56601200-56604600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
5	chr1:56602600-56604200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:56602800-56604400	Enhancers	HUVEC	blood vessel
7	chr1:56602800-56604400	Enhancers	Osteobl	bone
8	chr1:56602800-56605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
11	chr1:56603600-56604200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:56603800-56604200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:56603800-56604200	Enhancers	K562	blood
14	chr1:56603800-56604800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:56604000-56604200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr1:56604000-56604400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:56604000-56604400	Enhancers	NHDF-Ad	bronchial
18	chr1:56604000-56605200	Weak transcription	Placenta Amnion	Placenta Amnion

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