Variant report

Variant	rs6675451
Chromosome Location	chr1:56547251-56547252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10158150	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10888955	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206731	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206735	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1149639	0.87[ASN][1000 genomes]
rs1156337	0.83[EUR][1000 genomes]
rs1156338	0.83[EUR][1000 genomes]
rs12025982	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12041298	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12043247	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12131359	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1235423	0.86[ASN][1000 genomes]
rs1331855	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331856	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412215	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1412217	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1547157	0.84[EUR][1000 genomes]
rs1724988	0.86[ASN][1000 genomes]
rs1998715	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192106	0.82[EUR][1000 genomes]
rs2211047	0.83[EUR][1000 genomes]
rs2404391	0.84[EUR][1000 genomes]
rs2404393	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4926707	0.86[EUR][1000 genomes]
rs4926708	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56845669	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61772104	0.83[EUR][1000 genomes]
rs6670027	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673458	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6675960	0.81[EUR][1000 genomes]
rs7525207	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534031	0.84[EUR][1000 genomes]
rs7551693	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778122	0.86[ASN][1000 genomes]
rs778127	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9436997	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs973501	0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6675451	POU3F1	trans	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56540200-56549600	Weak transcription	Left Ventricle	heart
2	chr1:56543000-56550000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56546200-56548400	Flanking Active TSS	NHDF-Ad	bronchial
4	chr1:56546400-56547400	Enhancers	Fetal Lung	lung
5	chr1:56546600-56547600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56546800-56547400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56546800-56547400	Enhancers	Ovary	ovary
8	chr1:56546800-56547800	Enhancers	NHLF	lung
9	chr1:56546800-56548200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56547000-56547400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:56547000-56547400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:56547000-56547400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr1:56547000-56547400	Enhancers	Fetal Muscle Leg	muscle
14	chr1:56547000-56547400	Flanking Active TSS	Osteobl	bone
15	chr1:56547200-56547400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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