Variant report

Variant	rs1149639
Chromosome Location	chr1:56613644-56613645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10888955	0.81[AMR][1000 genomes]
rs11206731	0.87[ASN][1000 genomes]
rs11206735	0.87[ASN][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149647	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12025982	0.87[ASN][1000 genomes]
rs12041298	0.84[ASN][1000 genomes]
rs12043247	0.85[ASN][1000 genomes]
rs1230037	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1235423	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1236961	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1331855	0.87[ASN][1000 genomes]
rs1341341	0.82[AMR][1000 genomes]
rs1412217	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1557060	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1557061	0.83[AMR][1000 genomes]
rs1724988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1935050	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs2000147	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2096085	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2404524	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4927309	0.82[AMR][1000 genomes]
rs6670027	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6675451	0.87[ASN][1000 genomes]
rs697583	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706375	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706376	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs706383	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706395	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7538742	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7551693	0.86[ASN][1000 genomes]
rs778120	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778122	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778127	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778382	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778397	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778410	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778425	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778426	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778428	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778430	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778431	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs947008	0.92[CEU][hapmap];0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1149639	MRPL37	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56611400-56613800	Enhancers	Fetal Stomach	stomach
4	chr1:56612600-56615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:56612600-56616000	Weak transcription	Psoas Muscle	Psoas
6	chr1:56612800-56616400	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
8	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
9	chr1:56613000-56616000	Weak transcription	Adipose Nuclei	Adipose
10	chr1:56613400-56614000	Enhancers	Fetal Intestine Large	intestine
11	chr1:56613400-56615200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:56613600-56613800	Enhancers	Fetal Intestine Small	intestine
13	chr1:56613600-56613800	Enhancers	Rectal Smooth Muscle	rectum
14	chr1:56613600-56615000	Weak transcription	NHDF-Ad	bronchial
15	chr1:56613600-56615200	Enhancers	HUVEC	blood vessel
16	chr1:56613600-56615400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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