Variant report

Variant	rs12043247
Chromosome Location	chr1:56555203-56555204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10158150	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10888955	0.83[ASN][1000 genomes]
rs11206731	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206735	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1149639	0.85[ASN][1000 genomes]
rs12025982	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12041298	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12131359	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1235423	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1331855	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1331856	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1412215	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1412217	0.90[ASN][1000 genomes]
rs1724988	0.84[ASN][1000 genomes]
rs1998715	0.81[ASN][1000 genomes]
rs2404393	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4926707	0.80[EUR][1000 genomes]
rs56845669	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6670027	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6673458	0.82[EUR][1000 genomes]
rs6675451	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7525207	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7551693	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778120	0.80[ASN][1000 genomes]
rs778122	0.84[ASN][1000 genomes]
rs778127	0.90[ASN][1000 genomes]
rs9436997	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56555000-56555400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:56555000-56555400	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links