Variant report

Variant	rs10158150
Chromosome Location	chr1:56571231-56571232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10888955	0.83[EUR][1000 genomes]
rs11206731	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11206735	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1156337	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1156338	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12025982	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12041298	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12043247	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131359	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1331855	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1331856	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1412215	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1412217	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1547157	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1998715	0.83[EUR][1000 genomes]
rs2192106	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2211047	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2404391	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2404393	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4926707	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4926708	0.84[EUR][1000 genomes]
rs56845669	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61772104	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6670027	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6673458	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6675451	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6675960	0.80[EUR][1000 genomes]
rs7525207	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7534031	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7551693	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9436997	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs973501	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56570600-56571400	Weak transcription	Fetal Heart	heart
2	chr1:56570800-56571400	Enhancers	Dnd41	blood
3	chr1:56571200-56571800	Enhancers	Fetal Thymus	thymus
4	chr1:56571200-56572000	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links