Variant report

Variant	rs6673458
Chromosome Location	chr1:56554996-56554997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10158150	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11206731	0.88[EUR][1000 genomes]
rs11206735	0.84[EUR][1000 genomes]
rs12025982	0.85[EUR][1000 genomes]
rs12041298	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12043247	0.82[EUR][1000 genomes]
rs12131359	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1331855	0.87[EUR][1000 genomes]
rs1331856	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1412215	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2404393	0.82[EUR][1000 genomes]
rs56845669	0.83[EUR][1000 genomes]
rs6670027	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6675451	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7525207	0.88[EUR][1000 genomes]
rs7551693	0.88[EUR][1000 genomes]
rs9436997	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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