Variant report

Variant	rs778397
Chromosome Location	chr1:56700455-56700456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1149639	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149641	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1149647	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1230037	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1235423	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1236961	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1341341	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1412217	0.83[AMR][1000 genomes]
rs1557060	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1557061	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1724988	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1935050	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2000147	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2096085	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2211292	0.84[EUR][1000 genomes]
rs2404524	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4927309	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs697583	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706375	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706376	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706383	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706395	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7538742	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778120	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778122	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778127	0.88[AMR][1000 genomes]
rs778382	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs778410	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778425	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778426	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778428	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778430	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778431	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs947008	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56696600-56701800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:56700000-56700800	Enhancers	Cortex derived primary cultured neurospheres	brain

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