Variant report

Variant	rs1149641
Chromosome Location	chr1:56622259-56622260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1149639	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149647	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1230037	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1235423	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1236961	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1412217	0.82[AMR][1000 genomes]
rs1724988	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2000147	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2096085	0.81[AMR][1000 genomes]
rs2404524	0.81[AMR][1000 genomes]
rs697583	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706375	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs706376	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs706383	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706395	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778120	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778122	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778127	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778382	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778397	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778410	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778425	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778426	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778428	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778430	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56619200-56622400	Weak transcription	Fetal Thymus	thymus
3	chr1:56619400-56622600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56621400-56624000	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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