Variant report

Variant	rs2793683
Chromosome Location	chr1:56761549-56761550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:55933029..55935882-chr1:56759713..56761736,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10789017	0.84[EUR][1000 genomes]
rs2096086	0.84[EUR][1000 genomes]
rs2777758	0.84[AMR][1000 genomes]
rs2792774	0.84[AMR][1000 genomes]
rs2792775	0.84[AMR][1000 genomes]
rs2792776	0.84[AMR][1000 genomes]
rs2792783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2793663	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2793665	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2793666	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2793672	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2793675	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793677	0.82[EUR][1000 genomes]
rs2793681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793688	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793690	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9436537	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9436538	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9436999	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs947252	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56753200-56763600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:56756000-56761800	Weak transcription	HepG2	liver
3	chr1:56757400-56761600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:56757600-56761800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56757800-56761600	Weak transcription	Right Atrium	heart
6	chr1:56757800-56762200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:56757800-56762600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:56757800-56762800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56757800-56763000	Weak transcription	Fetal Heart	heart
10	chr1:56757800-56763200	Weak transcription	Fetal Intestine Large	intestine
11	chr1:56757800-56764800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:56757800-56765200	Weak transcription	Ovary	ovary
13	chr1:56757800-56786000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:56758000-56763000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56758000-56768000	Weak transcription	Right Ventricle	heart
16	chr1:56758600-56770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:56759800-56767600	Weak transcription	Aorta	Aorta
18	chr1:56759800-56768000	Weak transcription	Left Ventricle	heart
19	chr1:56760200-56763400	Weak transcription	Psoas Muscle	Psoas
20	chr1:56761400-56761800	Enhancers	Primary neutrophils fromperipheralblood	blood

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