Variant report

Variant	rs12119318
Chromosome Location	chr1:56696241-56696242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10888959	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206756	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206759	0.80[AMR][1000 genomes]
rs12117416	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118289	0.80[AMR][1000 genomes]
rs12118298	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118755	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119413	0.80[AMR][1000 genomes]
rs12121243	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129181	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132862	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136560	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140232	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140921	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12142085	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12143116	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12144574	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341337	0.82[EUR][1000 genomes]
rs1341339	1.00[CEU][hapmap];1.00[CHD][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs1341358	0.95[EUR][1000 genomes]
rs1417768	0.83[EUR][1000 genomes]
rs1417771	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423986	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792798	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792799	0.95[EUR][1000 genomes]
rs2792800	0.81[EUR][1000 genomes]
rs57193460	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6588612	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6673309	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685185	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687944	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6694549	0.80[AMR][1000 genomes]
rs72675587	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675591	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677469	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677477	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512771	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512969	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7548377	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7554047	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12119318	DMRTB1	cis	cerebellum	SCAN
rs12119318	C8B	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
2	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56695400-56696600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56695600-56700000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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