Variant report

Variant	rs1341339
Chromosome Location	chr1:56725188-56725189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56724876..56727299-chr1:56729656..56732190,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10888959	0.93[EUR][1000 genomes]
rs11206756	0.95[EUR][1000 genomes]
rs12117416	0.96[EUR][1000 genomes]
rs12118298	0.96[EUR][1000 genomes]
rs12118755	0.88[EUR][1000 genomes]
rs12119318	0.96[EUR][1000 genomes]
rs12121243	0.96[EUR][1000 genomes]
rs12129181	0.96[EUR][1000 genomes]
rs12132862	0.96[EUR][1000 genomes]
rs12136560	0.82[EUR][1000 genomes]
rs12140232	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140564	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12140921	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12142085	0.85[EUR][1000 genomes]
rs12143116	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12144574	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1341337	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1341358	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417768	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1417771	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17423986	0.93[EUR][1000 genomes]
rs2792797	0.90[AMR][1000 genomes]
rs2792798	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792799	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792800	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57193460	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6588611	0.80[EUR][1000 genomes]
rs6588612	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6673309	1.00[CEU][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6685185	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6687944	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675587	0.90[EUR][1000 genomes]
rs72675591	0.96[EUR][1000 genomes]
rs72677469	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677477	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7512771	0.96[EUR][1000 genomes]
rs7512969	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548377	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554047	0.95[EUR][1000 genomes]
rs7556455	0.96[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1341339	DMRTB1	cis	cerebellum	SCAN
rs1341339	C8B	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56720800-56725200	Enhancers	Fetal Muscle Leg	muscle
2	chr1:56720800-56725400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:56721800-56730000	Weak transcription	Ovary	ovary
4	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:56723600-56725600	Enhancers	Left Ventricle	heart
6	chr1:56723800-56725200	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:56724200-56726000	Weak transcription	Placenta	Placenta
8	chr1:56724400-56725600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:56724600-56725400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:56725000-56725200	Enhancers	Right Atrium	heart
11	chr1:56725000-56725600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:56725000-56725600	Enhancers	Fetal Heart	heart
13	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas

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