Variant report

Variant	rs12143116
Chromosome Location	chr1:56685433-56685434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10888959	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11206756	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206759	0.88[AMR][1000 genomes]
rs11206760	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12117416	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12118289	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12118298	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12118755	0.88[EUR][1000 genomes]
rs12119318	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12119413	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12121243	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12126843	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12129181	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12132862	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12136560	0.84[EUR][1000 genomes]
rs12140232	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12140564	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140921	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12142085	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12144574	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341337	0.85[EUR][1000 genomes]
rs1341339	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1341358	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1417768	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1417771	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17423986	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2792798	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792799	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792800	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57193460	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6588611	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6588612	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673309	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6685185	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6687944	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694549	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72675587	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72675591	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72677469	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72677477	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7512771	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7512969	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7548377	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7554047	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7556455	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56679000-56686600	Weak transcription	Psoas Muscle	Psoas
2	chr1:56685200-56686000	Enhancers	Placenta	Placenta

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