Variant report

Variant	rs12140232
Chromosome Location	chr1:56716709-56716710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56716406..56718859-chr1:56719242..56721929,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10888959	0.92[EUR][1000 genomes]
rs11206756	0.93[EUR][1000 genomes]
rs11206760	0.80[AMR][1000 genomes]
rs12117416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118755	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119318	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129181	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136560	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140564	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12140921	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12142085	0.84[EUR][1000 genomes]
rs12143116	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12144574	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1341337	0.82[EUR][1000 genomes]
rs1341339	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341358	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417768	0.83[EUR][1000 genomes]
rs1417771	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17423986	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2792798	0.95[EUR][1000 genomes]
rs2792799	0.95[EUR][1000 genomes]
rs2792800	0.81[EUR][1000 genomes]
rs57193460	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6588612	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6673309	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6685185	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6687944	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675587	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675591	0.94[EUR][1000 genomes]
rs72677469	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677477	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7512771	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7512969	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7548377	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554047	0.93[EUR][1000 genomes]
rs7556455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56714200-56717000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:56714600-56717400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:56715400-56716800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56715400-56717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:56716600-56717000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:56716600-56720800	Weak transcription	Adipose Nuclei	Adipose
10	chr1:56716600-56721000	Weak transcription	Colon Smooth Muscle	Colon

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