Variant report

Variant	rs12140564
Chromosome Location	chr1:56697047-56697048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10888959	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206756	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206759	0.90[AMR][1000 genomes]
rs11206760	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12117416	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118289	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12118298	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118755	0.88[EUR][1000 genomes]
rs12119318	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119413	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12121243	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126843	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12129181	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132862	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12136560	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12140232	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12140921	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12142085	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12143116	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12144574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341337	0.85[EUR][1000 genomes]
rs1341339	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1341358	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1417768	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1417771	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423986	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792798	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792799	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792800	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57193460	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6588611	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6588612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673309	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685185	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687944	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6694549	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72675587	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72675591	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677469	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72677477	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512771	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512969	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7548377	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7554047	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556455	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
2	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56695600-56700000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:56696600-56701800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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