Variant report

Variant	rs17362438
Chromosome Location	chr1:56654191-56654192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRKAA2-10	chr1:56654042-56654226	NONHSAT003436

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10437059	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10888961	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11206765	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12075857	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12075995	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12076123	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12077346	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12077564	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12081440	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12082680	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12116494	0.83[ASN][1000 genomes]
rs12145670	0.88[ASN][1000 genomes]
rs12562857	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12565829	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12567619	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1331861	0.88[ASN][1000 genomes]
rs1467337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1467338	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17362459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362494	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153667	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3992066	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55633488	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55652225	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55742346	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55886189	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56022955	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56237067	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56907491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60773549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61595371	0.87[ASN][1000 genomes]
rs72660403	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72675573	0.88[ASN][1000 genomes]
rs72675578	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72675597	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72675598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72675599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72677407	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72677430	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72677472	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72677474	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72677478	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs928389	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17362438	CDCP2	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56647000-56655800	Weak transcription	Aorta	Aorta
2	chr1:56647200-56655000	Weak transcription	Fetal Kidney	kidney
3	chr1:56647800-56654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:56647800-56654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:56647800-56654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:56651800-56654400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:56652000-56654800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:56652200-56654200	Weak transcription	Brain Substantia Nigra	brain
9	chr1:56652200-56654400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:56652200-56654600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:56652200-56656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:56652400-56654200	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56653400-56654400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:56653800-56654800	Enhancers	Right Atrium	heart
18	chr1:56653800-56655000	Enhancers	HepG2	liver
19	chr1:56653800-56656200	Enhancers	Fetal Stomach	stomach
20	chr1:56653800-56657000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:56653800-56657000	Enhancers	Adipose Nuclei	Adipose
22	chr1:56653800-56657000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
24	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
25	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
26	chr1:56653800-56669400	Enhancers	Placenta	Placenta
27	chr1:56654000-56654200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr1:56654000-56654200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:56654000-56654200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:56654000-56656000	Enhancers	Fetal Lung	lung
31	chr1:56654000-56656200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:56654000-56657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle

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