Variant report

Variant	rs12116494
Chromosome Location	chr1:56632340-56632341
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11206747	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1149640	0.83[EUR][1000 genomes]
rs1149643	0.84[EUR][1000 genomes]
rs12118277	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12121236	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12125786	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12133795	0.92[AFR][1000 genomes]
rs12142826	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12143516	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12144217	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12145670	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145789	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12563043	0.80[AFR][1000 genomes]
rs1304824	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1331857	0.80[AFR][1000 genomes]
rs1331858	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1331859	0.92[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1331861	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467337	0.82[ASN][1000 genomes]
rs1467338	0.82[ASN][1000 genomes]
rs17362438	0.83[ASN][1000 genomes]
rs17362459	0.83[ASN][1000 genomes]
rs17362494	0.82[ASN][1000 genomes]
rs1757915	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55886189	0.82[ASN][1000 genomes]
rs56907491	0.82[ASN][1000 genomes]
rs60773549	0.83[ASN][1000 genomes]
rs61595371	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6703713	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs706405	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs706406	0.84[EUR][1000 genomes]
rs72675530	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72675531	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72675552	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72675557	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72675569	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72675573	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72675578	0.83[ASN][1000 genomes]
rs72675594	0.82[ASN][1000 genomes]
rs72675597	0.82[ASN][1000 genomes]
rs72675598	0.82[ASN][1000 genomes]
rs72675599	0.82[ASN][1000 genomes]
rs778121	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778125	0.84[ASN][1000 genomes]
rs778386	0.82[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56625000-56633000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:56625400-56633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56625600-56636200	Weak transcription	Aorta	Aorta
4	chr1:56631800-56633000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:56631800-56633000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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