Variant report

Variant	rs778386
Chromosome Location	chr1:56623915-56623916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1149640	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1149643	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12116494	0.82[EUR][1000 genomes]
rs12144217	0.82[EUR][1000 genomes]
rs1230003	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1230004	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1230005	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1304824	0.84[EUR][1000 genomes]
rs706405	0.85[EUR][1000 genomes]
rs706406	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72675569	0.83[EUR][1000 genomes]
rs778124	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436415	chr1:56623664-56625062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56621400-56624000	Enhancers	Dnd41	blood
3	chr1:56622400-56624000	Enhancers	Fetal Thymus	thymus
4	chr1:56622600-56624000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56622600-56624000	Enhancers	Primary T cells from cord blood	blood
6	chr1:56623400-56624600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:56623600-56626400	Weak transcription	Fetal Kidney	kidney
8	chr1:56623800-56624800	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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