Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11206747	0.87[EUR][1000 genomes]
rs1149640	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1149643	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12118277	0.87[EUR][1000 genomes]
rs12121236	0.86[EUR][1000 genomes]
rs12125786	0.87[EUR][1000 genomes]
rs12133795	0.85[EUR][1000 genomes]
rs12142826	0.86[EUR][1000 genomes]
rs12143516	0.87[EUR][1000 genomes]
rs12145789	0.87[EUR][1000 genomes]
rs1230003	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331858	0.83[EUR][1000 genomes]
rs1331859	0.85[EUR][1000 genomes]
rs1757915	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6703713	0.87[EUR][1000 genomes]
rs706406	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72675530	0.82[EUR][1000 genomes]
rs72675531	0.82[EUR][1000 genomes]
rs72675552	0.87[EUR][1000 genomes]
rs72675557	0.87[EUR][1000 genomes]
rs778121	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778124	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778125	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778386	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1230004	ZFYVE9	cis	cerebellum	SCAN
rs1230004	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56612600-56615600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:56612600-56616000	Weak transcription	Psoas Muscle	Psoas
5	chr1:56612800-56616400	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
7	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
8	chr1:56613000-56616000	Weak transcription	Adipose Nuclei	Adipose
9	chr1:56613400-56615200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:56613600-56615000	Weak transcription	NHDF-Ad	bronchial
11	chr1:56613600-56615200	Enhancers	HUVEC	blood vessel
12	chr1:56613600-56615400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:56613800-56616400	Weak transcription	Fetal Stomach	stomach
14	chr1:56614000-56616600	Weak transcription	Fetal Intestine Large	intestine

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