Variant report

Variant	rs12125786
Chromosome Location	chr1:56616712-56616713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11206747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12116494	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12118277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133795	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12137066	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12142826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144217	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12145670	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12145789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230003	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1230004	0.87[EUR][1000 genomes]
rs1230005	0.87[EUR][1000 genomes]
rs12563043	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12568575	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1304824	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331854	0.81[EUR][1000 genomes]
rs1331857	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1331858	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1331859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1331861	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1412216	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1757915	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41533449	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61595371	0.82[ASN][1000 genomes]
rs6702275	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6703713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706405	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72675514	0.81[EUR][1000 genomes]
rs72675530	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72675531	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72675540	0.88[ASN][1000 genomes]
rs72675552	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72675557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675569	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72675573	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7547019	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs778121	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778124	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778125	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
4	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
5	chr1:56615000-56617400	Enhancers	NHDF-Ad	bronchial
6	chr1:56615200-56618600	Weak transcription	HUVEC	blood vessel
7	chr1:56615400-56617600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56616000-56617400	Enhancers	Adipose Nuclei	Adipose
9	chr1:56616000-56617600	Enhancers	Psoas Muscle	Psoas
10	chr1:56616000-56618800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:56616400-56617000	Enhancers	Fetal Muscle Leg	muscle
12	chr1:56616400-56617400	Enhancers	Fetal Stomach	stomach
13	chr1:56616600-56616800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:56616600-56618000	Enhancers	Fetal Intestine Large	intestine

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