Variant report

Variant	rs6702275
Chromosome Location	chr1:56545484-56545485
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11206718	0.84[AFR][1000 genomes]
rs11206736	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206747	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1156339	0.84[AFR][1000 genomes]
rs12118277	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12121236	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12125033	0.80[AFR][1000 genomes]
rs12125786	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12133795	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12136504	0.84[AFR][1000 genomes]
rs12137066	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142826	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12143504	0.84[AFR][1000 genomes]
rs12143516	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12144217	0.84[AFR][1000 genomes]
rs12145789	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12563043	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564930	0.84[AFR][1000 genomes]
rs12568575	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1304824	0.80[AFR][1000 genomes]
rs1331854	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1331857	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1331858	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1331859	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1412216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41533449	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55695312	0.84[AFR][1000 genomes]
rs61772108	0.92[AFR][1000 genomes]
rs61772129	0.92[AFR][1000 genomes]
rs61772130	0.92[AFR][1000 genomes]
rs6588598	0.84[AFR][1000 genomes]
rs6588599	0.84[AFR][1000 genomes]
rs6703713	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72675514	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72675530	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72675531	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72675540	0.81[ASN][1000 genomes]
rs72675552	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72675557	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72675569	0.80[AFR][1000 genomes]
rs7523524	0.92[AFR][1000 genomes]
rs7547019	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs778125	0.81[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56540200-56549600	Weak transcription	Left Ventricle	heart
2	chr1:56540400-56545600	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56540400-56545800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:56540400-56546000	Weak transcription	NHLF	lung
5	chr1:56540400-56546200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:56540400-56546800	Weak transcription	Ovary	ovary
7	chr1:56540400-56547000	Weak transcription	Right Atrium	heart
8	chr1:56540600-56546200	Weak transcription	Adipose Nuclei	Adipose
9	chr1:56543000-56550000	Weak transcription	Psoas Muscle	Psoas
10	chr1:56543200-56545600	Weak transcription	Fetal Stomach	stomach
11	chr1:56543400-56545800	Weak transcription	Fetal Lung	lung
12	chr1:56543600-56546000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:56543800-56545600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:56544000-56546000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:56544600-56545800	Weak transcription	Osteobl	bone
16	chr1:56545000-56546600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:56545000-56546800	Enhancers	Hela-S3	cervix
18	chr1:56545000-56547200	Enhancers	HUVEC	blood vessel
19	chr1:56545200-56546200	Enhancers	NHDF-Ad	bronchial
20	chr1:56545400-56546200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links