Variant report

Variant	rs12564930
Chromosome Location	chr1:56494019-56494020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10489776	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10888951	0.85[EUR][1000 genomes]
rs11206716	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206718	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206719	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1156339	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12125033	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12136504	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12137066	0.84[AFR][1000 genomes]
rs12143504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568575	0.84[AFR][1000 genomes]
rs1331854	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1412216	0.84[AFR][1000 genomes]
rs1416127	0.82[EUR][1000 genomes]
rs2192107	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41533449	0.84[AFR][1000 genomes]
rs55695312	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56332616	0.84[EUR][1000 genomes]
rs58305300	0.84[EUR][1000 genomes]
rs61772108	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772129	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772130	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588598	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6588599	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6663053	0.84[EUR][1000 genomes]
rs6702275	0.84[AFR][1000 genomes]
rs7355027	0.85[EUR][1000 genomes]
rs7355032	0.84[EUR][1000 genomes]
rs7523524	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534051	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7547019	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56501800	Weak transcription	Aorta	Aorta
2	chr1:56491000-56495000	Weak transcription	Right Atrium	heart
3	chr1:56492200-56495000	Weak transcription	Placenta	Placenta
4	chr1:56492200-56496200	Weak transcription	Hela-S3	cervix
5	chr1:56492400-56506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:56493200-56495200	Enhancers	GM12878-XiMat	blood
7	chr1:56493600-56494400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:56494000-56494400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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