Variant report

Variant	rs7523524
Chromosome Location	chr1:56508041-56508042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10489774	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10888952	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11206717	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206718	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206720	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206721	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206722	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206723	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206725	0.80[AMR][1000 genomes]
rs11206726	0.81[AMR][1000 genomes]
rs11206728	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11206736	0.88[AFR][1000 genomes]
rs1156339	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12026783	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12121666	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12122883	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12122947	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12125033	0.88[AFR][1000 genomes]
rs12125402	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12128890	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12132353	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12133569	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12136504	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12137066	0.92[AFR][1000 genomes]
rs12137810	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12139823	0.85[EUR][1000 genomes]
rs12143504	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12563043	0.88[AFR][1000 genomes]
rs12564597	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12564930	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12568575	0.92[AFR][1000 genomes]
rs1331853	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1331854	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1331857	0.88[AFR][1000 genomes]
rs1331858	0.84[AFR][1000 genomes]
rs1412216	0.92[AFR][1000 genomes]
rs17404628	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2110031	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2110032	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2159869	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2159870	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41533449	0.92[AFR][1000 genomes]
rs4278395	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55695312	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61772108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61772129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61772130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6588598	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6588599	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6683440	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6688604	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6702275	0.92[AFR][1000 genomes]
rs6704036	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72675530	0.84[AFR][1000 genomes]
rs72675531	0.84[AFR][1000 genomes]
rs7534051	0.82[EUR][1000 genomes]
rs7547019	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56499600-56522200	Weak transcription	Placenta	Placenta
2	chr1:56507800-56509000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links