Variant report

Variant	rs1156339
Chromosome Location	chr1:56484606-56484607
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489776	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10888951	0.80[EUR][1000 genomes]
rs11206716	0.82[EUR][1000 genomes]
rs11206717	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206718	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206719	0.82[EUR][1000 genomes]
rs12125033	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12136504	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12137066	0.84[AFR][1000 genomes]
rs12143504	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12564930	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12568575	0.84[AFR][1000 genomes]
rs1331854	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1412216	0.84[AFR][1000 genomes]
rs2192107	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41533449	0.84[AFR][1000 genomes]
rs55695312	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56332616	0.89[EUR][1000 genomes]
rs58305300	0.81[EUR][1000 genomes]
rs61772108	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61772129	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61772130	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6588598	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6588599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6663053	0.89[EUR][1000 genomes]
rs6702275	0.84[AFR][1000 genomes]
rs7355027	0.80[EUR][1000 genomes]
rs7355032	0.81[EUR][1000 genomes]
rs7523524	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7534051	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7547019	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56483600-56484800	Weak transcription	Placenta	Placenta
2	chr1:56484600-56485200	Enhancers	Stomach Smooth Muscle	stomach

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