Variant report

Variant	rs2192107
Chromosome Location	chr1:56487039-56487040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10489774	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489776	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888951	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888952	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206716	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206717	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11206718	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11206719	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206720	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206721	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206722	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206723	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206725	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206726	0.95[ASN][1000 genomes]
rs11206728	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1156339	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12026783	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121666	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12122883	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12122947	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12125402	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12128890	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12132353	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133569	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12136504	0.81[AMR][1000 genomes]
rs12137810	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12139823	0.86[ASN][1000 genomes]
rs12143504	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12564597	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12564930	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1331853	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416127	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17404628	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110031	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110032	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159869	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2159870	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4278395	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55695312	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58305300	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588598	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6588599	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6683440	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6688604	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6704036	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355027	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7355032	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534051	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56489400	Weak transcription	Placenta	Placenta
2	chr1:56485200-56501800	Weak transcription	Aorta	Aorta

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