Variant report

Variant	rs58305300
Chromosome Location	chr1:56490746-56490747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10489774	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489776	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888952	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206716	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206717	0.84[EUR][1000 genomes]
rs11206718	0.84[EUR][1000 genomes]
rs11206719	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206720	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206721	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206722	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11206723	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206725	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206726	0.95[ASN][1000 genomes]
rs11206728	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1156339	0.81[EUR][1000 genomes]
rs12026783	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121666	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12122883	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12122947	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12125402	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12128890	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12132353	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133569	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12137810	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12139823	0.86[ASN][1000 genomes]
rs12143504	0.84[EUR][1000 genomes]
rs12564597	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12564930	0.84[EUR][1000 genomes]
rs1331853	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17404628	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110031	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110032	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159869	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2159870	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192107	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278395	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6683440	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6688604	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6704036	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7355032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56501800	Weak transcription	Aorta	Aorta
2	chr1:56489400-56492200	Enhancers	Placenta	Placenta
3	chr1:56490000-56491600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:56490400-56491400	Weak transcription	NHEK	skin

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