Variant report

Variant	rs11206717
Chromosome Location	chr1:56501029-56501030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489776	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10888951	0.85[EUR][1000 genomes]
rs11206716	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11206718	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206719	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1156339	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12125033	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12136504	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12143504	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564930	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331854	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1416127	0.82[EUR][1000 genomes]
rs2192107	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55695312	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56332616	0.84[EUR][1000 genomes]
rs58305300	0.84[EUR][1000 genomes]
rs61772108	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772129	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772130	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588598	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6588599	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6663053	0.84[EUR][1000 genomes]
rs7355027	0.85[EUR][1000 genomes]
rs7355032	0.84[EUR][1000 genomes]
rs7523524	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7534051	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7547019	0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56485200-56501800	Weak transcription	Aorta	Aorta
2	chr1:56492400-56506400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56497400-56501800	Weak transcription	Fetal Lung	lung
4	chr1:56498000-56502000	Enhancers	NHDF-Ad	bronchial
5	chr1:56499400-56501200	Enhancers	HSMM	muscle
6	chr1:56499600-56502200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:56499600-56522200	Weak transcription	Placenta	Placenta
8	chr1:56500200-56501400	Enhancers	HSMMtube	muscle
9	chr1:56500400-56501200	Enhancers	Adipose Nuclei	Adipose
10	chr1:56500400-56501200	Enhancers	Right Ventricle	heart
11	chr1:56500400-56502000	Enhancers	Left Ventricle	heart
12	chr1:56500400-56502200	Enhancers	Fetal Muscle Leg	muscle
13	chr1:56500800-56501800	Weak transcription	Hela-S3	cervix
14	chr1:56501000-56501600	Weak transcription	Fetal Stomach	stomach
15	chr1:56501000-56501800	Weak transcription	Ovary	ovary
16	chr1:56501000-56502000	Weak transcription	Right Atrium	heart
17	chr1:56501000-56506200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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