Variant report

Variant	rs12125033
Chromosome Location	chr1:56448355-56448356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11206717	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11206718	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1156339	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12136504	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12137066	0.80[AFR][1000 genomes]
rs12143504	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12563043	0.83[AFR][1000 genomes]
rs12564930	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12568575	0.80[AFR][1000 genomes]
rs1331854	0.83[AFR][1000 genomes]
rs1331857	0.83[AFR][1000 genomes]
rs1331858	0.80[AFR][1000 genomes]
rs1412216	0.80[AFR][1000 genomes]
rs41533449	0.80[AFR][1000 genomes]
rs55695312	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56332616	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61772108	0.88[AFR][1000 genomes]
rs61772129	0.88[AFR][1000 genomes]
rs61772130	0.88[AFR][1000 genomes]
rs6588598	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6588599	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6663053	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6702275	0.80[AFR][1000 genomes]
rs72673569	0.93[ASN][1000 genomes]
rs72675530	0.80[AFR][1000 genomes]
rs72675531	0.80[AFR][1000 genomes]
rs7523524	0.88[AFR][1000 genomes]
rs7534051	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7547019	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870513	chr1:56407227-56493106	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1003385	chr1:56430742-56468732	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56440000-56451400	Weak transcription	Ovary	ovary
2	chr1:56447200-56452400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:56447400-56453200	Weak transcription	NHDF-Ad	bronchial
4	chr1:56447800-56451400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56447800-56451400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:56447800-56451400	Weak transcription	Fetal Lung	lung
7	chr1:56447800-56451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links