Variant report

Variant	rs12118277
Chromosome Location	chr1:56609296-56609297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11206747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116494	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12121236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12125786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133795	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12137066	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12142826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12144217	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12145670	0.92[AFR][1000 genomes]
rs12145789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1230003	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1230004	0.87[EUR][1000 genomes]
rs1230005	0.87[EUR][1000 genomes]
rs12563043	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12568575	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1304824	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1331854	0.81[EUR][1000 genomes]
rs1331857	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1331858	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1331859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1331861	0.92[AFR][1000 genomes]
rs1412216	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1757915	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41533449	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6702275	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6703713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs706405	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72675514	0.80[EUR][1000 genomes]
rs72675530	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72675531	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72675540	0.91[ASN][1000 genomes]
rs72675552	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675569	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72675573	0.92[AFR][1000 genomes]
rs7547019	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs778121	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778124	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778125	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
2	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
4	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
5	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:56606400-56611600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56607400-56611200	Enhancers	Fetal Intestine Large	intestine
8	chr1:56607600-56610800	Enhancers	Fetal Intestine Small	intestine
9	chr1:56608000-56611000	Weak transcription	Thymus	Thymus
10	chr1:56608200-56609600	Enhancers	Primary T cells from cord blood	blood
11	chr1:56608200-56609600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:56608400-56609800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr1:56608800-56610400	Weak transcription	Fetal Thymus	thymus

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