Variant report

Variant	rs1757915
Chromosome Location	chr1:56615809-56615810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11206747	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12116494	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12118277	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121236	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12125786	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133795	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12142826	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143516	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144217	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12145670	0.81[ASN][1000 genomes]
rs12145789	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230003	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1230004	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1230005	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1304824	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331857	0.80[EUR][1000 genomes]
rs1331858	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1331859	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1331861	0.81[ASN][1000 genomes]
rs61595371	0.82[ASN][1000 genomes]
rs6703713	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706405	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72675530	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72675531	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72675540	0.88[ASN][1000 genomes]
rs72675552	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72675557	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675569	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72675573	0.81[ASN][1000 genomes]
rs778121	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778124	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778125	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1757915	ZFYVE9	cis	cerebellum	SCAN
rs1757915	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56611200-56617600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56612600-56616000	Weak transcription	Psoas Muscle	Psoas
4	chr1:56612800-56616400	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56612800-56616800	Weak transcription	Fetal Lung	lung
6	chr1:56612800-56618600	Weak transcription	Fetal Thymus	thymus
7	chr1:56613000-56616000	Weak transcription	Adipose Nuclei	Adipose
8	chr1:56613800-56616400	Weak transcription	Fetal Stomach	stomach
9	chr1:56614000-56616600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:56615000-56617400	Enhancers	NHDF-Ad	bronchial
11	chr1:56615200-56616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:56615200-56618600	Weak transcription	HUVEC	blood vessel
13	chr1:56615400-56617600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56615600-56616000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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