Variant report

Variant	rs72675569
Chromosome Location	chr1:56626575-56626576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11206747	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1149640	0.85[EUR][1000 genomes]
rs1149643	0.86[EUR][1000 genomes]
rs12116494	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12118277	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12121236	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12125786	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12133795	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12137066	0.80[AFR][1000 genomes]
rs12142826	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12143516	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12144217	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145670	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145789	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12563043	0.84[AFR][1000 genomes]
rs12568575	0.80[AFR][1000 genomes]
rs1304824	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331857	0.84[AFR][1000 genomes]
rs1331858	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1331859	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1331861	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1412216	0.80[AFR][1000 genomes]
rs1757915	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41533449	0.80[AFR][1000 genomes]
rs61595371	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6702275	0.80[AFR][1000 genomes]
rs6703713	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706405	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706406	0.87[EUR][1000 genomes]
rs72675530	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72675531	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72675552	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675557	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72675573	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7547019	0.80[AFR][1000 genomes]
rs778121	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778125	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778386	0.83[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56625000-56633000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:56625200-56628000	Weak transcription	Right Atrium	heart
3	chr1:56625400-56633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:56625600-56636200	Weak transcription	Aorta	Aorta
5	chr1:56626400-56627000	Enhancers	Fetal Kidney	kidney

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