Variant report

Variant	rs1331861
Chromosome Location	chr1:56636405-56636406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10437059	0.82[ASN][1000 genomes]
rs11206747	0.92[AFR][1000 genomes]
rs12116494	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12118277	0.92[AFR][1000 genomes]
rs12121236	0.92[AFR][1000 genomes]
rs12125786	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12133795	0.92[AFR][1000 genomes]
rs12142826	0.92[AFR][1000 genomes]
rs12143516	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12144217	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12145670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145789	0.92[AFR][1000 genomes]
rs12563043	0.80[AFR][1000 genomes]
rs1304824	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1331857	0.80[AFR][1000 genomes]
rs1331858	0.84[AFR][1000 genomes]
rs1331859	0.92[AFR][1000 genomes]
rs1467337	0.87[ASN][1000 genomes]
rs1467338	0.87[ASN][1000 genomes]
rs17362438	0.88[ASN][1000 genomes]
rs17362459	0.88[ASN][1000 genomes]
rs17362494	0.87[ASN][1000 genomes]
rs1757915	0.81[ASN][1000 genomes]
rs55886189	0.87[ASN][1000 genomes]
rs56907491	0.87[ASN][1000 genomes]
rs60773549	0.88[ASN][1000 genomes]
rs61595371	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6703713	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs706405	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72675530	0.84[AFR][1000 genomes]
rs72675531	0.84[AFR][1000 genomes]
rs72675552	0.81[AFR][1000 genomes]
rs72675557	0.92[AFR][1000 genomes]
rs72675569	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72675573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675578	0.88[ASN][1000 genomes]
rs72675594	0.87[ASN][1000 genomes]
rs72675597	0.87[ASN][1000 genomes]
rs72675598	0.87[ASN][1000 genomes]
rs72675599	0.87[ASN][1000 genomes]
rs72677407	0.85[ASN][1000 genomes]
rs72677430	0.82[ASN][1000 genomes]
rs778121	0.81[ASN][1000 genomes]
rs928389	0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1331861	DMRTB1	cis	cerebellum	SCAN
rs1331861	C8B	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56633600-56636600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:56633800-56636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56635000-56636800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:56635200-56636600	Enhancers	Osteobl	bone
5	chr1:56635200-56637000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:56635200-56637000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56635200-56637000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:56635200-56637000	Enhancers	NHDF-Ad	bronchial
9	chr1:56635400-56636800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:56635400-56637000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56636200-56636600	Enhancers	Colon Smooth Muscle	Colon
12	chr1:56636200-56636800	Enhancers	HepG2	liver
13	chr1:56636200-56637000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:56636200-56637000	Enhancers	Aorta	Aorta
15	chr1:56636200-56637000	Enhancers	Esophagus	oesophagus
16	chr1:56636200-56637000	Enhancers	Ovary	ovary
17	chr1:56636200-56637000	Enhancers	Psoas Muscle	Psoas
18	chr1:56636200-56637000	Enhancers	Right Atrium	heart
19	chr1:56636200-56637200	Enhancers	Fetal Heart	heart
20	chr1:56636400-56636800	Enhancers	Fetal Intestine Small	intestine
21	chr1:56636400-56636800	Enhancers	Stomach Smooth Muscle	stomach
22	chr1:56636400-56637000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:56636400-56637000	Enhancers	Fetal Intestine Large	intestine
24	chr1:56636400-56637200	Enhancers	Fetal Kidney	kidney
25	chr1:56636400-56640000	Weak transcription	NHLF	lung

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