Variant report

Variant	rs72675552
Chromosome Location	chr1:56604523-56604524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11206736	0.81[EUR][1000 genomes]
rs11206747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12116494	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12118277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12121236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12125786	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12133795	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12137066	0.83[EUR][1000 genomes]
rs12142826	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12143516	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12144217	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12145670	0.81[AFR][1000 genomes]
rs12145789	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1230003	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1230004	0.87[EUR][1000 genomes]
rs1230005	0.87[EUR][1000 genomes]
rs12563043	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12568575	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1304824	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1331854	0.83[EUR][1000 genomes]
rs1331857	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1331858	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1331859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1331861	0.81[AFR][1000 genomes]
rs1412216	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1757915	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41533449	0.83[EUR][1000 genomes]
rs6702275	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6703713	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs706405	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675514	0.82[EUR][1000 genomes]
rs72675530	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675531	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675540	0.93[ASN][1000 genomes]
rs72675557	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72675569	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675573	0.81[AFR][1000 genomes]
rs7547019	0.83[EUR][1000 genomes]
rs778121	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778124	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778125	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56600600-56604800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56601200-56604600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
4	chr1:56602800-56605400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
7	chr1:56603800-56604800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:56604000-56605200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:56604200-56607800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel

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