Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11206747	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149640	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1149643	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12118277	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12121236	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12125786	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12133795	0.83[EUR][1000 genomes]
rs12142826	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12143516	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12145789	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1230003	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230004	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230005	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1331858	0.81[EUR][1000 genomes]
rs1331859	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1757915	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6703713	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs706406	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72675530	0.80[EUR][1000 genomes]
rs72675531	0.80[EUR][1000 genomes]
rs72675552	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72675557	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778121	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778125	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778386	0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs778124	ZFYVE9	cis	cerebellum	SCAN
rs778124	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
2	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
4	chr1:56604200-56607800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
6	chr1:56604800-56606400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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