Variant report

Variant	rs1149640
Chromosome Location	chr1:56622011-56622012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1149643	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12116494	0.83[EUR][1000 genomes]
rs12144217	0.86[EUR][1000 genomes]
rs1230003	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230004	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230005	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1304824	0.85[EUR][1000 genomes]
rs706405	0.86[EUR][1000 genomes]
rs706406	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72675569	0.85[EUR][1000 genomes]
rs778121	0.80[AMR][1000 genomes]
rs778124	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778386	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56619200-56622400	Weak transcription	Fetal Thymus	thymus
3	chr1:56619400-56622600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56621400-56624000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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