Variant report

Variant	rs1304824
Chromosome Location	chr1:56624014-56624015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11206747	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1149640	0.85[EUR][1000 genomes]
rs1149643	0.85[EUR][1000 genomes]
rs12116494	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12118277	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12121236	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12125786	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12133795	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12137066	0.80[AFR][1000 genomes]
rs12142826	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12143516	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12144217	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145670	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145789	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12563043	0.84[AFR][1000 genomes]
rs12568575	0.80[AFR][1000 genomes]
rs1331857	0.84[AFR][1000 genomes]
rs1331858	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1331859	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1331861	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1412216	0.80[AFR][1000 genomes]
rs1757915	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41533449	0.80[AFR][1000 genomes]
rs61595371	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6702275	0.80[AFR][1000 genomes]
rs6703713	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706405	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706406	0.86[EUR][1000 genomes]
rs72675530	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72675531	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72675552	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675557	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72675569	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72675573	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7547019	0.80[AFR][1000 genomes]
rs778121	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778125	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778386	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436415	chr1:56623664-56625062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56623400-56624600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56623600-56626400	Weak transcription	Fetal Kidney	kidney
4	chr1:56623800-56624800	Weak transcription	Thymus	Thymus
5	chr1:56624000-56624400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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