Variant report

Variant	rs778125
Chromosome Location	chr1:56605746-56605747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11206747	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12116494	0.84[ASN][1000 genomes]
rs12118277	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12121236	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12125786	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12133795	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12137066	0.81[EUR][1000 genomes]
rs12142826	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12143516	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12144217	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145789	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1230003	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1230004	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1230005	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12563043	0.81[EUR][1000 genomes]
rs12568575	0.80[EUR][1000 genomes]
rs1304824	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1331854	0.80[EUR][1000 genomes]
rs1331857	0.82[EUR][1000 genomes]
rs1331858	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1331859	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1412216	0.81[EUR][1000 genomes]
rs1757915	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41533449	0.81[EUR][1000 genomes]
rs6702275	0.81[EUR][1000 genomes]
rs6703713	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706405	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72675530	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72675531	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72675540	0.90[ASN][1000 genomes]
rs72675552	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72675557	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72675569	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7547019	0.81[EUR][1000 genomes]
rs778121	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778124	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs778125	DMRTB1	cis	cerebellum	SCAN
rs778125	ZFYVE9	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56601800-56610400	Weak transcription	Aorta	Aorta
2	chr1:56603000-56609600	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56603000-56612000	Weak transcription	Psoas Muscle	Psoas
4	chr1:56604200-56607800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:56604400-56613600	Weak transcription	HUVEC	blood vessel
6	chr1:56604800-56606400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56605400-56605800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:56605400-56605800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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