Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11206736	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206747	0.81[EUR][1000 genomes]
rs12118277	0.80[EUR][1000 genomes]
rs12125786	0.81[EUR][1000 genomes]
rs12133795	0.84[EUR][1000 genomes]
rs12137066	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12143516	0.81[EUR][1000 genomes]
rs12145789	0.81[EUR][1000 genomes]
rs12563043	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12568575	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1331854	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1331857	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1331858	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1331859	0.84[EUR][1000 genomes]
rs1412216	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41533449	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6702275	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6703713	0.81[EUR][1000 genomes]
rs72675530	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72675531	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72675552	0.82[EUR][1000 genomes]
rs72675557	0.81[EUR][1000 genomes]
rs7547019	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56548800-56558600	Weak transcription	NHDF-Ad	bronchial
2	chr1:56550200-56552600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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