Variant report

Variant	rs17459384
Chromosome Location	chr1:57870215-57870216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57866069..57868024-chr1:57868935..57871351,2	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10047071	1.00[JPT][hapmap]
rs10047073	1.00[JPT][hapmap]
rs10493219	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs10493221	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs10493225	0.86[JPT][hapmap]
rs10889034	0.86[JPT][hapmap]
rs10889042	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10889043	0.93[ASN][1000 genomes]
rs10889044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207010	0.86[JPT][hapmap]
rs11207011	0.86[JPT][hapmap]
rs11207020	0.91[EUR][1000 genomes]
rs11207021	0.91[EUR][1000 genomes]
rs11207024	0.93[ASN][1000 genomes]
rs11207025	0.93[ASN][1000 genomes]
rs11207026	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs11207027	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11207028	0.93[ASN][1000 genomes]
rs11207029	0.93[ASN][1000 genomes]
rs11579258	0.91[EUR][1000 genomes]
rs11581250	0.91[EUR][1000 genomes]
rs11585284	0.93[EUR][1000 genomes]
rs11585751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586826	0.91[EUR][1000 genomes]
rs11590652	0.84[EUR][1000 genomes]
rs11799925	0.89[CHB][hapmap]
rs11803514	0.93[ASN][1000 genomes]
rs12044912	0.86[JPT][hapmap]
rs12046102	0.86[JPT][hapmap]
rs12061812	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs12087888	0.86[JPT][hapmap]
rs12092706	0.93[ASN][1000 genomes]
rs12124445	0.93[EUR][1000 genomes]
rs12125219	0.91[EUR][1000 genomes]
rs12127603	0.91[EUR][1000 genomes]
rs12128305	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12132685	0.86[JPT][hapmap]
rs12136107	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12137169	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137540	0.82[EUR][1000 genomes]
rs12139429	0.89[CHB][hapmap]
rs12142821	0.89[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1240442	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12405761	1.00[JPT][hapmap]
rs12566690	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12568449	0.85[JPT][hapmap]
rs12726704	1.00[JPT][hapmap]
rs12752978	0.86[JPT][hapmap]
rs1334239	0.86[JPT][hapmap]
rs1334240	0.86[JPT][hapmap]
rs1424463	0.85[JPT][hapmap]
rs166514	0.86[JPT][hapmap]
rs17115685	0.91[EUR][1000 genomes]
rs17115686	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17115750	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs17424216	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17425017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17425189	0.86[JPT][hapmap];0.82[AFR][1000 genomes]
rs17456661	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs17457873	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17458730	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs17458751	0.82[ASN][1000 genomes]
rs17459948	0.86[JPT][hapmap]
rs1778032	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs1778033	0.82[ASN][1000 genomes]
rs2052615	0.83[EUR][1000 genomes]
rs2052616	0.83[EUR][1000 genomes]
rs2052617	0.91[EUR][1000 genomes]
rs2216808	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2405696	1.00[JPT][hapmap]
rs2405994	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs267638	0.86[JPT][hapmap]
rs267647	0.86[JPT][hapmap]
rs267650	0.86[JPT][hapmap]
rs269044	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs269045	0.82[ASN][1000 genomes]
rs269048	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs269049	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs269050	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs269054	0.87[ASN][1000 genomes]
rs269057	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs2781325	0.86[JPT][hapmap]
rs3738553	0.89[CHB][hapmap]
rs3844041	0.86[CHB][hapmap];0.93[ASN][1000 genomes]
rs3850549	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs3850550	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs3850552	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs3850556	0.93[ASN][1000 genomes]
rs3861834	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs3896279	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs390203	1.00[JPT][hapmap]
rs3909556	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs4279875	0.86[JPT][hapmap]
rs439378	0.86[JPT][hapmap]
rs4912163	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4912244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4912246	0.82[ASN][1000 genomes]
rs4912247	0.93[ASN][1000 genomes]
rs511115	0.93[ASN][1000 genomes]
rs515148	0.93[ASN][1000 genomes]
rs516918	0.93[ASN][1000 genomes]
rs517825	0.93[ASN][1000 genomes]
rs532926	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs539310	0.82[ASN][1000 genomes]
rs540431	0.82[ASN][1000 genomes]
rs553674	0.82[ASN][1000 genomes]
rs563099	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs563270	0.89[CHB][hapmap];0.93[ASN][1000 genomes]
rs564880	0.82[ASN][1000 genomes]
rs564951	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs565032	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs566847	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs61769756	0.93[ASN][1000 genomes]
rs6587768	0.93[ASN][1000 genomes]
rs6669975	1.00[JPT][hapmap]
rs6687842	0.89[CHB][hapmap]
rs72674872	0.88[EUR][1000 genomes]
rs72674892	0.82[ASN][1000 genomes]
rs736109	0.86[JPT][hapmap]
rs736110	0.86[JPT][hapmap]
rs746937	0.86[JPT][hapmap]
rs7513076	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7528735	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs7535763	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7540817	0.91[EUR][1000 genomes]
rs9436130	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57860400-57874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:57862400-57870800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57862400-57873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57863800-57875400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:57864400-57873400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:57866600-57870600	Weak transcription	Stomach Mucosa	stomach
7	chr1:57867400-57872800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:57867600-57874400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:57867800-57870400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr1:57867800-57874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:57867800-57875400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:57868000-57873600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:57869200-57870400	Weak transcription	Fetal Brain Male	brain
14	chr1:57870000-57870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:57870000-57871400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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